※ dbPPT Protein Information
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UniProt Accession | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Theoretical PI | 10 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight | 87979.72 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Genbank Protein ID | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Genbank Nucleotide ID | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Name | DEAD-box ATP-dependent RNA helicase 40 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Gene Name | Os01g0549400; LOC_Os01g36860; B1156H12.12-1; B1156H12.12-2; OsJ_02174 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Created Date | 2007-04-03 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Organism | Oryza sativa subsp. japonica(Rice) | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
NCBI Taxa ID | 39947 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Phosphorylation Sites |
Functional Description ATP-dependent RNA helicase involved nonsense-mediated mRNA decay and ribosome biogenesis through rRNA processing (By similarity). Sequence Annotation chain 1 792 DEAD-box ATP-dependent RNA helicase 40 domain 17 51 WW domain 181 355 Helicase ATP-binding domain 384 528 Helicase C-terminal nucleotide phosphate-binding region 194 201 ATP short sequence motif 150 178 Q motif short sequence motif 303 306 DEAD box compositionally biased region 49 67 Pro-rich splice variant 1 141 In isoform 2. splice variant 142 164 In isoform 2. Keyword Alternative splicing,ATP-binding,Complete proteome,Helicase,Hydrolase,Nonsense-mediated mRNA decay,Nucleotide-binding,Nucleus,Reference proteome,Ribosome biogenesis,RNA-binding,rRNA processing Sequence Source UniProt Protein Sequence MSAGTAPAAP RYAPDDPSLP KPWRGLVDGT TGYLYYWNPE TNITQYEKPL PPEDQLPPPP 60 PLPPPPPRSG RGDRDRDRRD RSRSRTPPRR DHRDRDRDRD RRHDDHRSAP SHHHPLPAAA 120 AIAADDPSTE AYRHRHEITV VGDNVPAPIT SFETGGFPPE ILKEIQRAGF SSPTPIQAQS 180 WPIALQCQDV VAIAKTGSGK TLGYLLPGFM HIKRLQNNPR SGPTVLVLAP TRELATQILE 240 EAVKFGRSSR ISSTCLYGGA PKGPQLRDLD RGVDVVVATP GRLNDILEMR RISLKQVSYL 300 VLDEADRMLD MGFEPQIRKI VKEIPPRRQT LMYTATWPKE VRRIAEDLLV HPVQVTIGSV 360 DELVANSAIT QNVELITPSE KLRRLEQILR SQDSGSKVLI FCTTKRMCDQ LARTLTRQFG 420 ASAIHGDKSQ SEREKVLSHF RSGRSPILVA TDVAARGLDI KDIRVVINYD FPTGIEDYVH 480 RIGRTGRAGA TGVAYTFFCD QDSKYAADLI KILEGANQRV PRDLADMASR GGRGGRKRNR 540 WATRSDRGGS HSELDSRYGG RDGLSGSSGR LDSSRSSRRH DYGDDGRSRR SGRGRSRSRS 600 RSDSDRYSRS PKRSRRHSRS RTRSRSRSRS RSYTRNRRAS RSRSRSPGAS RRHERSATGS 660 GSALPDSGHG ERKRTPEADP SRNHTNHSDP KDDRHPEDGK VGKVDLDRSP TPQDKSGPYS 720 PAYNGKTSRS VSPGNQVEGN NKAAEVSKNP DPSSPPHHGK TREDEEEGMI DEDGEIADDP 780 RANATVQNGG DN 792 Gene Ontology GO:0005634; C: nucleus; IEA: UniProtKB-SubCell GO:0005524; F: ATP binding; IEA: UniProtKB-KW GO:0004004; F: ATP-dependent RNA helicase activity; IEA: EnsemblPlants/Gramene GO:0003723; F: RNA binding; IEA: UniProtKB-KW GO:0000184; P: nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA: UniProtKB-KW GO:0006364; P: rRNA processing; IEA: UniProtKB-KW Interpro Pfam SMART PROSITE PRINTS |