※ dbPPT Protein Information
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UniProt Accession | |||||||||||||||||||||||||||||||||||||||||||
Theoretical PI | 9.91 | ||||||||||||||||||||||||||||||||||||||||||
Molecular Weight | 58813.24 | ||||||||||||||||||||||||||||||||||||||||||
Genbank Protein ID | |||||||||||||||||||||||||||||||||||||||||||
Genbank Nucleotide ID | |||||||||||||||||||||||||||||||||||||||||||
Protein Name | RNA polymerase sigma factor sigE, chloroplastic/mitochondrial; Sigma factor E; Sigma-E; RNA polymerase sigma factor sig5; Atsig5; Sigma factor 5 | ||||||||||||||||||||||||||||||||||||||||||
Gene Name | SIGE; SIG5; At5g24120; MLE8.4 | ||||||||||||||||||||||||||||||||||||||||||
Created Date | 2012-07-11 | ||||||||||||||||||||||||||||||||||||||||||
Organism | Arabidopsis thaliana(Mouse-ear cress) | ||||||||||||||||||||||||||||||||||||||||||
NCBI Taxa ID | 3702 | ||||||||||||||||||||||||||||||||||||||||||
Phosphorylation Sites |
Functional Description Essential protein. Sigma factors are initiation factors that promote the attachment of plastid-encoded RNA polymerase (PEP) to specific initiation sites (e.g. psbA and psbD) and are then released. Essential for blue light-mediated transcription of psbD, which encodes the photosystem II reaction center protein D2. Plays a role in reproduction. Sequence Annotation transit peptide 1 34 Chloroplast chain 35 517 RNA polymerase sigma factor sigE, chloroplastic/mitochondrial DNA-binding region 478 497 H-T-H motif short sequence motif 310 323 Polymerase core binding splice variant 1 In isoform 2. Keyword Alternative splicing,Chloroplast,Complete proteome,DNA-binding,Mitochondrion,Plastid,Reference proteome,Sigma factor,Transcription,Transcription regulation,Transit peptide Sequence Source UniProt Protein Sequence MGVVSISSSA ARSPLGLGND LLTHRSSLKK PSIVAFKADD SSNSALIIPP REQVLIPAEK 60 HNEKKREVTR RKPCKTPKKP LSLEHNSAPS CSLGVDYNEA AARLESIYKL SPATTTLVED 120 DVEDGGSKAK VSRRRKRKES GEEKKVVVRN NVKKEKRMSL DKRIALKRNV QEKPVVASVD 180 KKVTKRQQEE EKIERLVRDY SASNDIVSLD WKKMKIPPVL SSTEHAWLFK LMQPMKALLE 240 VKDVLQKSLG REPREAEIAG EINMTAGEVK KKIEIGRAAR NKLIKHNLRL VLFVMNKYFH 300 EFTNGPKFQD LCQAGMRGLI TAIDRFEPKR KFRLSTYGLF WIRHAIIRSM TTSNFTRVPF 360 GLESVRVEIY KAKTELWFEM GRPPTEDEVV ERLKITPERY REVLRAAKPV LSLNSKHSVT 420 QEEFINGITD VDGVGANNSR QPALLRLALD DVLDSLKPKE SLVIRQRYGL DGKGDRTLGE 480 IAGNLNISRE MVRKHEVKAL MKLKHQARVD YLRQYIV 517 Gene Ontology GO:0009507; C: chloroplast; IDA: UniProtKB GO:0005739; C: mitochondrion; IDA: UniProtKB GO:0003677; F: DNA binding; IEA: UniProtKB-KW GO:0001053; F: plastid sigma factor activity; IMP: UniProtKB GO:0003700; F: sequence-specific DNA binding transcription factor activity; IEA: InterPro GO:0016987; F: sigma factor activity; ISS: TAIR GO:0071483; P: cellular response to blue light; IEP: UniProtKB GO:0009658; P: chloroplast organization; IMP: TAIR GO:0006352; P: DNA-templated transcription, initiation; ISS: UniProtKB GO:0010207; P: photosystem II assembly; IMP: UniProtKB GO:0045893; P: positive regulation of transcription, DNA-templated; IMP: TAIR GO:2001141; P: regulation of RNA biosynthetic process; IMP: UniProtKB GO:0009637; P: response to blue light; IGI: TAIR GO:0010218; P: response to far red light; IEP: TAIR GO:0010114; P: response to red light; IEP: TAIR Interpro InterPro; IPR014284; RNA_pol_sigma-70_dom InterPro; IPR000943; RNA_pol_sigma70 InterPro; IPR007627; RNA_pol_sigma70_r2 InterPro; IPR007624; RNA_pol_sigma70_r3 InterPro; IPR007630; RNA_pol_sigma70_r4 InterPro; IPR013325; RNA_pol_sigma_r2 InterPro; IPR013324; RNA_pol_sigma_r3_r4 InterPro; IPR011991; WHTH_DNA-bd_dom Pfam SMART PROSITE PRINTS PR00046; SIGMA70FCT |